MmuALTA1033395-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70252971-70254540:+
Coord C1 exon
chr2:70252971-70253181
Coord A exon
chr2:70254393-70254395
Coord C2 exon
chr2:70254396-70254540
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
3' ss Seq
GTTTTCCTTCTCTCTCACAGTAG
3' ss Score
8.81
Exon sequences
Seq C1 exon
CTGCCTGCGTGCTCTGCATTAGCTCCGAAGAGCTTCAGGAGGCCCTCACTTCCCACTGTGTGGTCACACGAGGGGAGACCATTGTCAGAGCCAACACAGTGGACAGGGCTGAAGACGTCAGGGACGCCATGTCTAAGGCCCTCTATGGGAGGCTGTTCAGCTGGATTGTGAATCGAATCAACACACTCCTGCAGCCAGATAAAAACATATG
Seq A exon
TAG
Seq C2 exon
TGCAGAGGACAGGATGAATGTGGGCATCTTGGACATTTTTGGCTTTGAGGATTTCCAGAGGAATTCCTTTGAACAGCTCTGCATAAATATTGCCAATGAACAGATCCAGTACTACTTCAATCAGCATGTGTTTGCTCTTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-36-30,36-29-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATGGGAGGCTGTTCAGCT
R:
GCCCACATTCATCCTGTCCTC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types