MmuALTA1033396-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70254393-70255400:+
Coord C1 exon
chr2:70254393-70254540
Coord A exon
chr2:70255247-70255288
Coord C2 exon
chr2:70255289-70255400
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CCCGGTCCGTTTCCCTCCAGATG
3' ss Score
11.45
Exon sequences
Seq C1 exon
TAGTGCAGAGGACAGGATGAATGTGGGCATCTTGGACATTTTTGGCTTTGAGGATTTCCAGAGGAATTCCTTTGAACAGCTCTGCATAAATATTGCCAATGAACAGATCCAGTACTACTTCAATCAGCATGTGTTTGCTCTTGAGCAG
Seq A exon
ATGGAGTACAAGAATGAAGGTGTCGATGCTGTCCTCGTGCAG
Seq C2 exon
TATGAAGACAATCGCCCACTCCTGGACATGTTCCTCCAAAAACCCTTGGGCCTTCTGGCACTTCTGGATGAAGAAAGTCGATTTCCCCAAGGGACAGACCAGACCTTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-37-32,37-31-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCATCTTGGACATTTTTGGC
R:
CAGGAGTGGGCGATTGTCTTC
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types