MmuALTA1034140-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000043059 | Zfp513
Description
zinc finger protein 513 [Source:MGI Symbol;Acc:MGI:2141255]
Coordinates
chr5:31199706-31200147:-
Coord C1 exon
chr5:31199971-31200147
Coord A exon
NA
Coord C2 exon
chr5:31199706-31199806
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
ACCTGGCTCGGCACATGAAGACT
3' ss Score
-1.34
Exon sequences
Seq C1 exon
ATGCGCTGATCCTGCCAGACTTGAGTCTTCATGTGCCACCAGGTGGTGCCAGTTTCCTGCCAGACTGTGGGCAGCTGCGGGGTGAAGGGGAGAGCTTGTGTGGAACTGGATCCGAACCACTGCCAGAGCTACTGTTCCCTTGGACCTGCCGGGGCTGTGGACAGGAACTGGAGGAGG
Seq A exon
NA
Seq C2 exon
ACTCACAGTGGTGAGAAACCCTTCCGCTGTGCCCGCTGTCCATACGCCTCTGCTCATCTGGATAACCTGAAACGGCACCAGCGCGTCCACACAGGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043059-11-18,11-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.307 A=NA C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAGCTACTGTTCCCTT
R:
GCTGGTGCCGTTTCAGGTTAT
Band lengths:
139-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types