MmuALTA1034320-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10655317-10656702:+
Coord C1 exon
chr19:10655317-10655417
Coord A exon
chr19:10656610-10656613
Coord C2 exon
chr19:10656614-10656702
Length
4 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GATGTTTCTCCCTCCTTTAGGCA
3' ss Score
10.99
Exon sequences
Seq C1 exon
TAAGCATCACTTCCTTTTGCACTCTCTCCTGCCAGGCTGCTCTCTGGATGACAACGGGGTTGAGTTTCCGATCGGACAGATCTGGTCGCCTGGTGATCCCT
Seq A exon
GCAG
Seq C2 exon
ACGGCTCTGTGAGCTGCAAGAGGACAGACTGCGTGGACTCTTGCCCGCACCCCATCCGGATTCCTGGACAGTGCTGTCCTGACTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-17-19,17-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009313=VWC=PD(50.0=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTCTCTGGATGACAAC
R:
CTGTCCTCTTGCAGCTCACAG
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types