MmuALTA1035229-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000047034 | Ankrd33
Description
ankyrin repeat domain 33 [Source:MGI Symbol;Acc:MGI:2443398]
Coordinates
chr15:101116077-101116706:+
Coord C1 exon
chr15:101116077-101116348
Coord A exon
chr15:101116581-101116632
Coord C2 exon
chr15:101116633-101116706
Length
52 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
CTGCTCTGTCCCCTAGACAGGCC
3' ss Score
4.3
Exon sequences
Seq C1 exon
GGTTGCAGGAGGAACTGCTCCTTGGCGTTTTGTCATAGCTGCCTGCTGAATAAAGAGGGACTCGGGCCGGCGGCAGAGGAGTCACTATTGCCCCGAGAGGACTGGACATGTCTGAGGCCCTGCCCTTCCCCAGCAACAAGACCTCAACCCCTGAATGCAATTTGAAGACACTGTACTGGGCATGTGTCCACAATGACCTTGCTGAGCTCCAAGCCAGGCTGGACGCTGGTGTGTCCCCAGAGGAGGCCTCCCAAGTGGACAGCAACGGGAGG
Seq A exon
GCCTCATGGTTGCATGCTACCATGGCTTTGGTTCCATTGTGGCTCTGCTCAG
Seq C2 exon
CTGCTGTCCTTTCCTGGATGTGAACCAGCAAGACAAAGACGGGAACACAGCCCTCATGCTGGCTGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047034-2-6,2-5,2-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=FE(60.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACTGGGCATGTGTCCAC
R:
CCCGTCTTTGTCTTGCTGGTT
Band lengths:
145-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types