MmuALTA1035317-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000047228 | A2ml1
Description
alpha-2-macroglobulin like 1 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128541004-128542903:-
Coord C1 exon
chr6:128542835-128542903
Coord A exon
chr6:128541095-128541103
Coord C2 exon
chr6:128541004-128541094
Length
9 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TATCATTCATGTCTTCCTAGGTT
3' ss Score
9.04
Exon sequences
Seq C1 exon
CTTAAATTCAATAGTCAAGTAACGAAGACGGACATAAAGAATGGCCACGTTCTGTTCTACTTGGAAAAT
Seq A exon
GTTCCCAAG
Seq C2 exon
GAAGCAACCAGCCTCACCTTCTCCATTGAACAAACTAACCATGTGGCCAATATCCAGCCAGCCCCAGTCACGGTCTACAGCTATGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-58-53,58-52-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(25.3=100)
A:
NA
C2:
PF076779=A2M_recep=FE(37.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACGTTCTGTTCTACTTG
R:
GACTGGGGCTGGCTGGATATT
Band lengths:
97-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types