MmuALTA1035594-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048038 | Ccdc187
Description
coiled-coil domain containing 187 [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26248250-26248907:-
Coord C1 exon
chr2:26248831-26248907
Coord A exon
NA
Coord C2 exon
chr2:26248250-26248350
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AATTCAATCCATCTCAGCAGCTC
3' ss Score
3.8
Exon sequences
Seq C1 exon
GGGAGAAACCTGTGAACAAGAGAGCCCAGACATCCACTTAGCCCACCTGGAAGCTGAGCAGGAGGCCACTTCTCCAG
Seq A exon
NA
Seq C2 exon
CTCCTGTGGCCTGTGAGGCTGAAACACAGCCTGCCTGGCACCTAGACAGCCCTCCATGCCAGTCTGCTGCCATCTTGGACCTGTGTTCTGAGACTGCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038-40-38,40-37-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.795
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACTTAGCCCACCTGGAA
R:
CTGGCATGGAGGGCTGTCTAG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types