MmuALTA1035660-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:141636283-141640419:-
Coord C1 exon
chr7:141640337-141640419
Coord A exon
chr7:141636378-141636541
Coord C2 exon
chr7:141636283-141636377
Length
164 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTTCTTCATTCTCCTCGAAGTCT
3' ss Score
6.75
Exon sequences
Seq C1 exon
GTAAAACCTCAGCATCCTACACGACGCAGCATCAGTCCACATCGTTCCACCTCACTACAATATCCAAATGGCCCACCAACGGA
Seq A exon
TCTACCACCGCCCATCTTACCTCCCTCACTACCCAAGCTGCTACATCAGGGCTACTGTCTTCAACCATGGGCATGACAAACCTGCCAAGTTCAGGCTCCCCAGACATCAACCATACCACTAGGCCTCCAGGTAGTAGCCCACTGCCCACATCTGCCTTCCTGAG
Seq C2 exon
CCGCAGCACTTCTCCCACTGGAAGCTCCTCACCTTCTACCCCAGTATCATCCTCCAATCCAGACTCCTCGGTCTCCTCGCCACCCTCGCATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-35-46,35-45,35-44,35-43-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGCATCCTACACGACG
R:
GATGCGAGGGTGGCGAGG
Band lengths:
170-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types