MmuALTA1035696-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048280 | Zfp738
Description
zinc finger protein 738 [Source:MGI Symbol;Acc:MGI:3040706]
Coordinates
chr13:67683433-67686606:-
Coord C1 exon
chr13:67686418-67686606
Coord A exon
chr13:67686011-67686037
Coord C2 exon
chr13:67683433-67686010
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTTATGTTGGATAATAAAGATG
3' ss Score
-0.26
Exon sequences
Seq C1 exon
CCCCTCTTCTCTTCCAGGTTTCCAAAATGCCTTTCCAGGCTAGAACCCAGGTTGTGGTCTGCTGGCTGGACACAACATTTGGCGAACCAACGCGGGACTGAGAAACGGCAAAGGATTTTTGGAAGAGACACTGCTGGTTCGGAGCTCCATGAAATAATTAAAGGATAAAGGAAATTCATACCGGAGAAG
Seq A exon
ATGGTATAAAAAACTTTATCTGCAAAG
Seq C2 exon
CCGAGAGCTGCCACGTGTTTCAGCCAGGAATCAGACACGTGGCAGGAGGGCCCCTGCTGGAAAAACTGTTCGTTTTAGGAAATAAGGGCGAGTGCACAGCCTCTTAGTTTCGGAGTAAAAAAGCTGATAAATGGTTTCTGACTAATGTGTTTGAGAATGGTAAAGTGCCTTTTATTCTATGATTGTAGCTAGAAAAATTAATATTCTCTGATTGGTCTAAATGTAACTGCTTCATTTGGTTCTTTTTTATTGATAATGTGCTCTGCATGTTTTCACATCCAGCTCATAAGTTGTTGGTTAAGATTAATAATTGTTACATTGCTATAGATGGTTAGTGTTAAATTTGATAACTCAAGTTTAGAGTCCTTCCGACACGTGGCATAAAGCAGGCCAAGAGGCTGGGTTTCTAAAGATATTTCTAGTTTAGATAATAATTAATGTGGTTCCTATCCTAAATAGTAAAATTTAAGATAAGATCTAAAACAATGCCTCTTTATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048280-6-2,6-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGACACTGCTGGTTCGG
R:
CTCCTGCCACGTGTCTGATTC
Band lengths:
116-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types