MmuALTA1035909-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41375834-41408402:-
Coord C1 exon
chr2:41408235-41408402
Coord A exon
chr2:41376014-41376016
Coord C2 exon
chr2:41375834-41376013
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CTTCCCCATTTGTAATGAAGAAG
3' ss Score
1.72
Exon sequences
Seq C1 exon
ATGATGACTGTGGAGACAGGAGTGATGAGGTGGGCTGTGTTCACTCCTGCCTTGATGACCAGTTCAGATGTTCAAGTGGCCGGTGTATCCCAGGGCACTGGGCCTGTGATGGTGACAATGACTGCGGAGACTTCAGTGATGAAACACATATCAATTGTACAAAAGAGG
Seq A exon
AAG
Seq C2 exon
CTCGTTCTCCTGCTGGTTGCATCGGGAATGAATTTCAGTGCCGTCCTGATGGAAACTGCATCCCTGATCTGTGGCGCTGTGATGGAGAGAAAGACTGTGAGGATGGCAGTGATGAGAAGGGCTGCAATGGTACCATTCGACTGTGTGACCACAAAACCAAGTTTTCCTGCAGGAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-39-34,39-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=PD(31.6=21.1),PF0005713=Ldl_recept_a=WD(100=68.4)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=61.3),PF0005713=Ldl_recept_a=PU(35.9=22.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGCGGAGACTTCAGTGA
R:
CCATCAGGACGGCACTGAAAT
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types