MmuALTA1036357-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000050860 | Phospho1
Description
phosphatase, orphan 1 [Source:MGI Symbol;Acc:MGI:2447348]
Coordinates
chr11:95829747-95830701:+
Coord C1 exon
chr11:95829747-95829847
Coord A exon
NA
Coord C2 exon
chr11:95830551-95830701
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
3' ss Seq
CCTCTTCCCCCTGCTCCCAGGAC
3' ss Score
10.82
Exon sequences
Seq C1 exon
GGGGCTCCCACCTCCTTAAGCCCCATTGCTTCTCCTGTTGCCTGCTTGCTTCGGACTCTGGCAGAAACCCCACCTGCTGGCACGTGCTTCCCAGGGAATTG
Seq A exon
NA
Seq C2 exon
GACGGCAGGATGGCTGCGCCGGGCGCGCCTCGCTTCCTCCTCACCTTCGACTTCGATGAGACCATCGTGGACGAGAACAGCGACGACTCGATCGTGCGTGCCGCGCCAGGCCAGCAACTGCCCGAGAGCCTGCGTGCCACCTATCGCGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050860-2-5,2-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=94.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCCTTAAGCCCCATTGC
R:
CTCGCGATAGGTGGCACG
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types