MmuALTA1036767-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000052273 | Dnah3
Description
dynein, axonemal, heavy chain 3 [Source:MGI Symbol;Acc:MGI:2683040]
Coordinates
chr7:119938789-119943686:-
Coord C1 exon
chr7:119943461-119943686
Coord A exon
chr7:119938883-119939033
Coord C2 exon
chr7:119938789-119938882
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTGTCCTTTGAATTTCCAGGCT
3' ss Score
9.06
Exon sequences
Seq C1 exon
GTCTGCTGAAGTTTGCTGATGATGTTAGCATGGGAGGCACTAAAACACAGACCATCTCCCTTGGTCAAGGCCAAGGTCCTATTGCTGCCAATATGATCAACAAAGCCATCCATGAAGGGACCTGGGTGGTCCTACAGAACTGCCACCTGGCTACAAGCTGGATGCCAGCGTTAGAGAAGATTTGTGAGGAGGTGATTGTCCCTGAGAACACCAACTCAGAGTTCAG
Seq A exon
GCTCTGGCTAACTAGCTATCCATCAGAGAAGTTTCCCGTCAGCATTCTCCAGAATGGGATCAAAATGACCAACGAGCCCCCCAAAGGACTTAGGGCCAACCTTCTGCGTTCCTACCTCAATGACCCAATCTCAGACCCTTTGTTCTTCCAG
Seq C2 exon
AGCTGTACAAAGCCAGTTATATGGCAGAAACTGTTGTTTGGGCTTTGCTTCTTCCATGCCATTGTCCAGGAGAGGAGGAACTATGGAGCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052273-67-70,67-69-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCAAGGCCAAGGTCCTA
R:
TCCTCTCCTGGACAATGGCAT
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types