MmuALTA1037745-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000055003 | Lrtm2
Description
leucine-rich repeats and transmembrane domains 2 [Source:MGI Symbol;Acc:MGI:2141485]
Coordinates
chr6:119324201-119325921:-
Coord C1 exon
chr6:119325821-119325921
Coord A exon
NA
Coord C2 exon
chr6:119324201-119324383
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TGTGTCTCTCAGGCCAGCAGCAG
3' ss Score
-3.2
Exon sequences
Seq C1 exon
GACTCAGAAGCCTGTGACCCACCCTGACTGACCATGTAACCTTGGCAAGCTGTTATGATATCTGTGCATTTGGGTGCTGCAGCCGGCTCGCTATTTAACAG
Seq A exon
NA
Seq C2 exon
CAGAAGAGCAGGAAGCCCTGACCTGCGGGAGTTATAAATCGGCCAGCTGGCAGAAGACCAAGCTTGTAATTCACCTCAAGGTGATAGTGGGCTCAGAGGCAGGGGGTGGTGCAGCAGCTCACTCCCTACCTGTCAGCAGCAGCTACAAGGGAAGGGCCTCGCCTCTGCCTCCCCACAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055003-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGGCTCGCTATTTAACA
R:
CTGCCTCTGAGCCCACTATCA
Band lengths:
124-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types