MmuALTA1037759-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81598911-81636234:+
Coord C1 exon
chr15:81598911-81599011
Coord A exon
NA
Coord C2 exon
chr15:81636178-81636234
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTTTTT
5' ss Score
-5.02
3' ss Seq
TGTCTATTTTCTTTCCTTAGTAC
3' ss Score
8.58
Exon sequences
Seq C1 exon
CGGTCAGGTTCTTTAAAAGAAGAAATGAAACGAATGCTTCCCCTGCCCGGCATTAATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
NA
Seq C2 exon
TACAATAAATAAAGAACAGTTTTCCAAGAGAAAAAATGACACGTTGGATCCTGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-6-43,6-42-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTGCCCGGCATTAAT
R:
AGTTCAGGATCCAACGTGTCA
Band lengths:
122-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types