Special

MmuALTA1037867-2/2 @ mm10

Alternative 3'ss

Gene
Description
zinc finger protein 459 [Source:MGI Symbol;Acc:MGI:3040701]
Coordinates
chr13:67413834-67421418:-
Coord C1 exon
chr13:67421342-67421418
Coord A exon
chr13:67413918-67413960
Coord C2 exon
chr13:67413834-67413917
Length
43 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGT
5' ss Score
6.36
3' ss Seq
TTCACTGGTCTTCATTTCAGGAA
3' ss Score
9.8
Exon sequences
Seq C1 exon
AACACTCGTCAATCTTCCCGAAAGTTGGACTGGAGTCCTGTGATGCTGAAGATTCCTGTAGCATCTCTGACTTAGAG
Seq A exon
GAAATGCTGTCATTCAGGGATGTGGCCGTTGATTTCTCTGCAG
Seq C2 exon
AAGAGTGGGAATGCCTGGAGCCTGCTCAGTGGCATCTGTACAGGGATGTGATGCTGGAGAATTACAGCCACCTTGTGTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055560-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=97.6)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGAAAGTTGGACTGGAGT
R:
CAGGAACACAAGGTGGCTGTA
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types