MmuALTA1038125-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000056300 | Zfp981
Description
zinc finger protein 981 [Source:MGI Symbol;Acc:MGI:3700965]
Coordinates
chr4:146502027-146532153:+
Coord C1 exon
chr4:146502027-146502144
Coord A exon
NA
Coord C2 exon
chr4:146532073-146532153
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
TTGATGTGAAATTTAAGAAGAAT
3' ss Score
-2.54
Exon sequences
Seq C1 exon
CAGGAAGTCATGGAGGGAGACTAGTGCCTAGTGTTTGCTGAACCTGAAAACTTCCTTAAGGTGCAGTTGCTGTGCTGGCCTCCTAGGATATTCAGCAGCTGGTCCTGTCACCTGCCAG
Seq A exon
NA
Seq C2 exon
AATTTGAATGTTTGCTCCTCACCAAGAATCTGGGAGAAGAACAACTAAAGAATGAGTGCCTCTCTGGTAAACCCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056300-3-22,3-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.100
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGGTGCAGTTGCTGTGCT
R:
CCCAGATTCTTGGTGAGGAGC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types