MmuALTA1038224-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000056592 | Zfp658
Description
zinc finger protein 658 [Source:MGI Symbol;Acc:MGI:2652821]
Coordinates
chr7:43564614-43567394:+
Coord C1 exon
chr7:43564614-43564843
Coord A exon
NA
Coord C2 exon
chr7:43567268-43567394
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGTTACCTTTTCTGTTACAGAGA
3' ss Score
10.45
Exon sequences
Seq C1 exon
GTCAAAGGCAGGCCACATCAGCCAGGCTGGGGGATTTTTCTACCTCACCACAGCTGGCCTCTCTGCTCAGCTGCTCTCCTGGGAACCTCTAGCCACTCAACCAGCTTCCAGTTCCTGAGAAAAATTGCATCTGCCAGCAAAGAGGCAAGAGAGGAAACATACCTGCTGACATGAAATTGTCCCAGAAGGCCCAGAGACTGCACCCACAGGAGCAGGAAGGGTCCCGTGAG
Seq A exon
NA
Seq C2 exon
AGATTGGTGTCCTTTGAGGATGTGACTGTGGACTTCAGCCAGGAGGAGTGGCGACGCCTGGACTCCGTCCAGAGACACCTGTACCAGGACGTGATGCTGGAGATCTACAGCCACCTCTTGGCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056592-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTGTCCCAGAAGGCCCA
R:
TCCTGGCTGAAGTCCACAGTC
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types