MmuALTA1038396-3/4 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67254458-67254873:+
Coord C1 exon
chr11:67254458-67254576
Coord A exon
chr11:67254683-67254793
Coord C2 exon
chr11:67254794-67254873
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTTGGGTTATTTAGGCCAAGAAC
3' ss Score
-8.36
Exon sequences
Seq C1 exon
GCGAGTTTTCCCGACAGCTGGATGAAAAAGACGCTATGGTTTCTCAGCTTTCCCGAGGCAAACAAGCATTTACACAACAGATTGAGGAACTAAAGAGGCAGCTAGAGGAAGAGTCCAAG
Seq A exon
AACGCACTGGCCCACGCCCTGCAGTCAGCTCGCCATGACTGTGACCTGCTGCGGGAACAGTATGAAGAGGAGCAGGAAGCCAAGGCTGAGCTGCAGAGGGCCATGTCCAAG
Seq C2 exon
GCCAACAGCGAGGTAGCCCAGTGGAGGACGAAATATGAGACGGATGCCATCCAGCGCACAGAGGAGCTGGAAGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-48-43,48-42,48-41,48-40-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=NA C2=0.636
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF059116=DUF869=FE(43.8=100),PF0003816=Filament=FE(12.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF059116=DUF869=PD(23.6=31.8),PF0003816=Filament=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTTCCCGACAGCTGGAT
R:
GCCTCTTCCAGCTCCTCTGT
Band lengths:
194-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types