MmuALTA1038401-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67257092-67258738:+
Coord C1 exon
chr11:67257092-67257295
Coord A exon
chr11:67258670-67258682
Coord C2 exon
chr11:67258683-67258738
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CAGACATTTCCCAAATCCAGGGA
3' ss Score
4.73
Exon sequences
Seq C1 exon
GACACACAGCTGCACCTGGACGATGCTCTCAGAGGCCAGGACGACCTGAAAGAGCAGCTGGCCATGGTTGAGCGCAGAGCCAACCTGATGCAGGCTGAGATCGAGGAGCTCAGGGCATCCCTGGAACAGACAGAGAGGAGCAGGAGAGTGGCCGAGCAAGAGCTACTGGATGCCAGTGAGCGCGTGCAGCTCCTCCACACCCAG
Seq A exon
GGAGAGATGGAAG
Seq C2 exon
ACATCGTCCAGGAAGCCCGCAACGCAGAAGAGAAGGCCAAGAAAGCCATCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-56-58,56-57,56-55-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAGCTACTGGATGCCAG
R:
TTCTTGGCCTTCTCTTCTGCG
Band lengths:
92-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types