MmuALTA1038430-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35145057-35147411:+
Coord C1 exon
chr2:35145057-35145236
Coord A exon
NA
Coord C2 exon
chr2:35147235-35147411
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGATTCTTTTATTTTAGAAGAAG
3' ss Score
0.54
Exon sequences
Seq C1 exon
ATTAAGTTTGATAAAAGACAACATAATGCAAGAATCCAGCAATTAGAAAATGAAATTCACTATTTGCAAGAGAACCTAAAAAGTATGGAAAAAATCCAAGGCCTTACAGACCTTCAGCTTCAGGAAGCAGATGAAGAGAAGGAAAGAATTCTGGCCCAACTCCAGGAGTTAGAGAAAAAG
Seq A exon
NA
Seq C2 exon
AAGCGTGAAGATGCCAGATCTCAGGAACAGTTTCTTGGTTTAGATGAAGAACTGAAGAGTCTGAAGAAAGCGGTGGCTGCTTCTGATAAATTAGCTGCGGCTGAGCTCACCATTGCCAAAGACCAGCTCAAGTCCCTGCACGGAACTGTTGTGAGAATTAATCAGGAGCGAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-40-40,40-39-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.090
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(24.1=100)
A:
NA
C2:
PF041117=APG6=PD(52.5=69.7)
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTTACAGACCTTCAGCT
R:
TGAGATCTGGCATCTTCACGC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types