MmuALTA1038865-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000058402 | Zfp420
Description
zinc finger protein 420 [Source:MGI Symbol;Acc:MGI:2444666]
Coordinates
chr7:29859979-29861068:+
Coord C1 exon
chr7:29859979-29860093
Coord A exon
chr7:29860908-29861015
Coord C2 exon
chr7:29861016-29861068
Length
108 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCTCCCCAATTACTCCCAGAAT
3' ss Score
5.4
Exon sequences
Seq C1 exon
GGGGTACTTGCGTCACGAGAGGGTTGTGTCTGGAGGATCTCCTAAGCATCCCATAGAGCAGGCTGCCTGTAGTGGAGCCCGGCGCAGGAGGCGGGACCCTGAGCTTCCCTCGGAG
Seq A exon
AATGTAAAGACTTAACCCCTCTGTGGGGACGGAGGAAGAGGTTGTCTCTAATTCAGAGTATATGGCAAGAACAACATAGCATCTCATTTAACTTTTTTATTCTCAAAG
Seq C2 exon
TACAACACAGAAGAGGAAAAATGGCCATTGTCCATCTAGAAGGGAAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058402-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTACTTGCGTCACGAGAG
R:
CTTCCCTTCTAGATGGACAATGGC
Band lengths:
162-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types