MmuALTA1039054-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29499125-29501290:-
Coord C1 exon
chr6:29501202-29501290
Coord A exon
NA
Coord C2 exon
chr6:29499125-29499218
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CCTCTGCCTACCCTTACCAGGAG
3' ss Score
7.85
Exon sequences
Seq C1 exon
CCTCAGGCTGCACAGAAGGGAACTCTCATAGGGACCATGGCCAAGAGTGGACCACTCCTGGAGACCCCTGCCGCATCTGCCAGTGCCTG
Seq A exon
NA
Seq C2 exon
GAGGGCCACATCCAGTGCCGCCAGCGGGAGTGTGCCAGCCTGTGTCCATACCCTGCCAGGCCCCTTCCGGGCACCTGTTGCCCGGTGTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-11-21,11-20-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(45.6=86.7)
A:
NA
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCTGCACAGAAGGGAA
R:
GTCACACACCGGGCAACAG
Band lengths:
181-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types