MmuALTA1039163-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80897198-80898040:+
Coord C1 exon
chr10:80897198-80897369
Coord A exon
chr10:80897844-80897897
Coord C2 exon
chr10:80897898-80898040
Length
54 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
CACATACACGCACCCTGCAGCTA
3' ss Score
4.39
Exon sequences
Seq C1 exon
ATTGTGGCCTGGCACCCCCCGGGGCCCTGACCCGGATAGTGGGCGGCAGCGCAGCCTCGCTTGGGGAGTGGCCCTGGCAAGTGAGCCTGTGGCTGCGGCGCAGGGAGCACCGATGTGGGGCGGTACTGGTGGCCGAGAGGTGGCTTCTGTCTGCAGCACACTGTTTCGACAT
Seq A exon
CTATGGGGACCCTATGCAGTGGGCGGCCTTCCTGGGCACCCCATTCCTGAGCAG
Seq C2 exon
CACGGAGGGCCAGTTGGAGCGCGTGGCACGCATCTATCGCCACCCGTTCTACAACATCTACACACTGGACTATGACGTGGCACTGCTGGAGCTGGCGGGACCCGTGCGCCGCAGCCGCTTGGTGCGACCCATCTGCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-22-25,22-24,22-23-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.9=77.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGGGCGGTACTGGT
R:
GCCACGTCATAGTCCAGTGTG
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types