MmuALTA1040275-1/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000063047 | Zfp780b
Description
zinc finger protein 780B [Source:MGI Symbol;Acc:MGI:2444764]
Coordinates
chr7:27976752-27979139:-
Coord C1 exon
chr7:27979090-27979139
Coord A exon
NA
Coord C2 exon
chr7:27976752-27976833
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
CGTCTCTCCCACCACCACAGTGC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTTTTTCTCGTAGGTGGAAGAAATCGCTCTATGGCCTACGTCCTCACAGA
Seq A exon
NA
Seq C2 exon
TGCTGCACATCCAACCTCTGCCATTCAAACCGCATTGTCCAGCGTTTCACTGTTCCAATGAGACGACAGGGTCAGATCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063047-0-3,0-2,0-1-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCGTAGGTGGAAGAAATCGC
R:
GGGATCTGACCCTGTCGTCTC
Band lengths:
127-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types