MmuALTA1040482-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000063714 | Sp3os
Description
trans-acting transcription factor 3, opposite strand [Source:MGI Symbol;Acc:MGI:1914936]
Coordinates
chr2:72987528-72988472:+
Coord C1 exon
chr2:72987528-72987632
Coord A exon
chr2:72988368-72988371
Coord C2 exon
chr2:72988372-72988472
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
TGGTGCATGCCCACGTGGAGCCA
3' ss Score
-8.62
Exon sequences
Seq C1 exon
GTATGCCTGCTGCTCATGGAGGGAAGAAGTGAGCTTGTAATCCCTTTGGAGCTAGAGTTACAGATGGCTATGAGTTGCCACAGGGATCCTGGAGATTTGACCGAG
Seq A exon
CCAG
Seq C2 exon
AAGACCACTCACAGGTTGATCCTCTTGTTCCACGATGTGAGTTGCAGATATCAAACTCAGGTGGCCAGGCCTGGCAGCAAGCTCTTCTGGCCGTTCAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063714-9-4,9-3,9-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTTGCCACAGGGATCCT
R:
CCTGGCCACCTGAGTTTGATA
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types