MmuALTA1041266-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000069053 | Uba1y
Description
ubiquitin-activating enzyme, Chr Y [Source:MGI Symbol;Acc:MGI:98891]
Coordinates
chrY:818649-820937:+
Coord C1 exon
chrY:818649-818750
Coord A exon
NA
Coord C2 exon
chrY:820821-820937
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGA
5' ss Score
5.51
3' ss Seq
GGTGCTCCCTATTTCTTCAGATG
3' ss Score
8.51
Exon sequences
Seq C1 exon
CTCATTTTGTGGAAGGAGTTTCCCGAGAGAAACTGGCTGCTGGCCAGGGACTTGAAGGTGGAGGCTGCTCCGTTCTGGGACCGGATCCTCGAGGAAGAGGAG
Seq A exon
NA
Seq C2 exon
ATGTCCAGCTCAGTCCTGTCCAAGAAACGCAAAGTGTCTGGACCTGACTCTAGTCTGGATTCTAGTTGGTCTCCTACCTATTCTGTGATGTTTGGCGTGCCCCCAGGGCCAACCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069053-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.359
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCGAGAGAAACTGGCT
R:
TGCGTTTCTTGGACAGGACTG
Band lengths:
116-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types