MmuALTA1041318-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:70004610-70015631:+
Coord C1 exon
chr10:70004610-70004991
Coord A exon
NA
Coord C2 exon
chr10:70015571-70015631
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
CATGTGCTCTCCTCCAGCAGGGA
3' ss Score
8.3
Exon sequences
Seq C1 exon
CTCTGACCAGGCTCGGGATTCTATTACCTCATACCTCACGGGAGAACCTGGGAAGATCGAAGCAAATGGAAACCACACAGCGGAAGTCATTCCAGAAGCAAAGGCAAAACCCTACTTCCCGGAATCCCAAAACGATATAGGGAAACAGAGCATCAAGGAGAACCTGAAACCAAAAACACACGGATGTGGTCGCACTGAGGAACCAGTGTCGCCCCTCACAGCCTACCAGAAATCTCTGGAAGAAACCAGCAAGCTTGTCATAGAAGACGCACCTAAACCCTGTGTGCCTGTCGGCATGAAAAAGATGACCAGGACTACGGCTGACGGCAAAGCCAGGCTCAACCTCCAGGAAGAAGAGGGGTCCACCAGGTCAGAGCCTAAG
Seq A exon
NA
Seq C2 exon
GGAGAAGGCTATAAGGTGAAGACGAAGAAGGAAATCCGGAACGTGGAGAAGAAAACCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-108-127,108-126-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.991 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000138095, ENSMUSP00000138123, ENSMUSP00000138285, ENSMUSP00000138326, ENSMUSP00000138347, ENSMUSP00000138348, ENSMUSP00000138356, ENSMUSP00000138413, ENSMUSP00000138481, ENSMUSP00000138531, ENSMUSP00000138586, ENSMUSP00000138623, ENSMUSP00000138671, ENSMUSP00000138686, ENSMUSP00000138770, ENSMUSP00000151906
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCCAGGAAGAAGAGGGG
R:
TTCTCCACGTTCCGGATTTCC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types