MmuALTA1041512-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000070420 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:145280500-145283780:+
Coord C1 exon
chr5:145280500-145280627
Coord A exon
chr5:145283352-145283378
Coord C2 exon
chr5:145283379-145283780
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CGTGCATCTTCTCTTCTCAGACG
3' ss Score
8.96
Exon sequences
Seq C1 exon
AGGTGCTAAGCGCGCAGTCAAGGCCCCGGGCAGGCCGGGTCGGGGCGGGGCTGGACGGAGCAAGCTGCTGCTCGGCGGGGCAGCAGCGGGCCAGGGGTCGTAGGCTCCACGCACAGCGGTGATCTCAG
Seq A exon
ACGGGTCACCCTTGTTGTCATCCTCAG
Seq C2 exon
CCTTGCCGGAGCTTGAAGATGCTGAAAGAGCGTCTGGAGATGGCAGGAGATCCTCAGCAGCAGATGGGTGCTCCAGTGGTCAAACTGGAGAAGGAGCTGCCATGGGGCAGGGGAGGGGAGGACTCGAGTCCCGAGGCATTTCGGTTGAGGTTTCGGCAGTTCCGCTACCAAGAGGCTGCTGGTCCCCAGGAAGCCCTCAGGGAGCTCCAAGAGCTCTGTCGCCGGTGGCTGAGGCCGGAGCTGCACACCAAAGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTCACCATCCTGCCCCGAGAGTTCTACACCTGGATCCGGGAACACAGCCCAGACAGCGGCAAGGCTCTGGTGGCCATGGTGGAGGAGCTGATGGGGAGCACGGAGGCCAAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.168
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(96.8=71.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACGGAGCAAGCTGC
R:
GCCATCTCCAGACGCTCTTTC
Band lengths:
122-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types