MmuALTA1042418-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000074764 | Sel1l2
Description
sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:MGI Symbol;Acc:MGI:2684964]
Coordinates
chr2:140229951-140230895:-
Coord C1 exon
chr2:140230767-140230895
Coord A exon
NA
Coord C2 exon
chr2:140229951-140230051
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TAAATGCCTCTTGCCAGCAGTTT
3' ss Score
3.03
Exon sequences
Seq C1 exon
GACATTCACTTGGCCAGAAGATTGTACGACATGGCTGCTCAGACAAGCCCAGATGCTCACATACCTGTGTTCTTTGCCCTTATGAAACTGGAAACCATGCATCTGCTCCATGATATCCTGTTTTTTAAT
Seq A exon
NA
Seq C2 exon
TTTACCATGAAATGGAAATGGCTGAAACTGGACAGCACTGTTGGACCATACTGGGATTTATTGGTGATTGGCCTAATTGTTGCCATGCTGATCTTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074764-33-34,33-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(41.2=32.6)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACCATGCATCTGCTCCA
R:
CCCAGTATGGTCCAACAGTGC
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types