MmuALTA1042548-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000075415 | Fnbp1
Description
formin binding protein 1 [Source:MGI Symbol;Acc:MGI:109606]
Coordinates
chr2:31054092-31055574:-
Coord C1 exon
chr2:31055428-31055574
Coord A exon
chr2:31054197-31054513
Coord C2 exon
chr2:31054092-31054196
Length
317 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGC
5' ss Score
7.35
3' ss Seq
CTTCATAATTATGTCACCAGTTC
3' ss Score
4.17
Exon sequences
Seq C1 exon
AAAATACAAGAGATGGAGGAGAGGCGGATTGTGCGTATTGGGGAGTCCATGAAGACGTACGCAGAGGTGGACCGGCAGGTGATACCCATCATCGGGAAGTGCCTGGACGGGATAGTGAAGGCGGCCGAGTCTATCGACCAGAAAAAC
Seq A exon
TTCAAGATCTCTCAGAAAAGTTTAACCGTCTAAGCGAAGCTCCCTCCAGGCACCCTGTTTAAGGGTTCAGTGACACGTCATACAACACGTGGACAAAGGATGAGTCCTTCAAAAGCAAAGCATCATGGGAGGTGGAGGCAAAACTTTGTGAGACAATCTCTCTAGCAATAAACACAGTGCTGAGGACCACAGTGCTGAGAAAGAGTGGGATTCTCAGTAGCATTTCTTGGGTCCTCCTTGGTCTGTATCATCGCCACTCTGGTGGTGACCTGCCTGTCCCTGGGTGTGATTGCAGGACTCCCAGCTGGTCGTAGAAG
Seq C2 exon
CCTATAAGTCAGGATTCGAGCCTCCTGGAGACATTGAATTCGAAGATTACACACAGCCAATGAAACGCACAGTGTCAGACAACAGCCTTTCCAGCTCCAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075415-41-30,41-29,41-28-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.547
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAGATGGAGGAGAGGCG
R:
TTCTTTGGAGCTGGAAAGGCTG
Band lengths:
246-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types