MmuALTA1042792-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16077972-16081736:+
Coord C1 exon
chr7:16077972-16079826
Coord A exon
NA
Coord C2 exon
chr7:16081678-16081736
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
AGATATCTTCTCATCTCCAGGGT
3' ss Score
7.22
Exon sequences
Seq C1 exon
CGGTGTCCAGAGAAACATCTCCTGGTGGCCCTAGGCGAGACACAAAAGGAGGCCCCAAAGTGGCCTCTGCACCACCATCCCTCACAGGGCCAGGCCTGCTCCCCTCCCGGAATCCAGACAGCTCTTCATTGGCCAAAGGGACATTGGACCTGGGGGACATTATCCCCAATGCAGGCTCAAGGCAGTCCCAGTTAGGTGGAGATGAGCCAGCTGGAACCCAGCTGGTTGGGAAACAGGGGCAAGGAGAAAATGGCCTGGCTTCAGGGGCCATGAGAGGTGAGAAGGGTCCAGCCTGCCCCCGAGGTGGAGGCTACAGGCTCTTCTCAGGGCACCCCAGGGCCCAGAGATTCTCAGGTTTCCGGAAGGAGAAAGTGAAGATGGATGTGTGCTGTGCAGCTTCTCCCAGCCAGGTGGCCATGGCCTCCTTTTCATCGGCTGGGCCTCTGGCAGATCCACCCAGAGACATGAAGTCCAAGCTGACAATCTTCAACAGAATCCAG
Seq A exon
NA
Seq C2 exon
GGTGGAAACATTTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTTGGCAGGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-12-12,12-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=PD(30.4=1.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCCACCCAGAGACATG
R:
CCTGCCAAGCTCTCTTCCTTC
Band lengths:
107-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types