MmuALTA1043124-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000084844 | Hoxb3os
Description
homeobox B3 and homeobox B2, opposite strand [Source:MGI Symbol;Acc:MGI:103211]
Coordinates
chr11:96345481-96346434:-
Coord C1 exon
chr11:96346334-96346434
Coord A exon
NA
Coord C2 exon
chr11:96345481-96345712
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
AAGTGGAACTCCTTCTCCAGCTC
3' ss Score
3.24
Exon sequences
Seq C1 exon
AACCTCACCCCTCCCTCCCCAGCCCGCCCCTCCCATCACAGGTGTGTCAGTTTGGGCGCTTCTTGGATTCTACCCTGAGGCGGTGCGTGGTGAGAGGAGAG
Seq A exon
NA
Seq C2 exon
CTCCACCAGCTGCGCGCTTGTGTACGCCGTGCGCGCCCGCTTGGACGCGGCCGACCCCGGGGGGCTCTTGTCCCCTCCCCCGCCGCCGCCGCCGCCCCCGCCGCTGCTGCCGCCGCCACCGCCGCCGCCGCCGCCACCACCGCCGCCGCCACCACCACAACCTTCTGCTGGACCCGAGGGGGGAGGGGTGGGAAGGGGAGAAAATGAAATAAAAGATAATTACTGAACACGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000084844-7-10,7-9-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCACCCCTCCCTCCC
R:
CGGGGGAGGGGACAAGAG
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types