MmuALTA1043615-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000086603 | Gm13620
Description
predicted gene 13620 [Source:MGI Symbol;Acc:MGI:3650077]
Coordinates
chr2:60125096-60125677:+
Coord C1 exon
chr2:60125096-60125359
Coord A exon
NA
Coord C2 exon
chr2:60125577-60125677
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAC
5' ss Score
4.58
3' ss Seq
TTCTAATTCCTGCCAGAAAGTCT
3' ss Score
-3.98
Exon sequences
Seq C1 exon
GGGCTGGAGGACGCCGCGAGGCCGGCGGCGAGGGCGGCGGGCACAATGGAGGGACGAGGCCCGCCCGGCCGCTCGCTCGCCCGCCCGCCCGCGCCCGCACTCCCAGCAAAGTTTCCGTTCCGCGGAGCCCGCACCCCCCACACACACACCCCGCCCGGTACCAGGGCCCCGCGCCCCGCGCCCTCCGCCCGGGACTCTAGTCGGGACCCCAGAGCCACCGCTGCGTCGCAGCCGCACAACAAAGAGCCACACCGGGCGGCGCGG
Seq A exon
NA
Seq C2 exon
TCTAGGGAGTTGGAGTGGAGGTGAGATCCGTGATCGCGAAAGCCCTGGCTCCCTCCGTCCCCGTCTTCCGCCGCTCGCTCTCTGATTAGTTCCTATCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086603-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTAGTCGGGACCCCAGA
R:
TCACGGATCTCACCTCCACTC
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types