MmuALTA1043649-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000086741 | Gm15816
Description
predicted gene 15816 [Source:MGI Symbol;Acc:MGI:3802114]
Coordinates
chr8:23140113-23141265:-
Coord C1 exon
chr8:23140825-23141265
Coord A exon
chr8:23140244-23140269
Coord C2 exon
chr8:23140113-23140243
Length
26 bp
Sequences
Splice sites
5' ss Seq
CATGTGCGT
5' ss Score
5.1
3' ss Seq
CCTCCACTTTTCTTCTTTAGTCT
3' ss Score
9.15
Exon sequences
Seq C1 exon
ATCCCCAGGGTCTGCCAGGGGACCCTCGACAATCACCTCCTCGTGCTGCTGGGTGTCGATGGCACCAGACGAGTCTACCTGCCGGACGACTTTGCGAATGATCTGGAAAGAGAGGGGAAGAGAAGGAGAGATGGTCAAGTCGTCAGGACAACATTTGAGAAGAACAGGGCTCCAGCAGAGGCACCAGGAGGAGAGGCCATGGCTTCCTGTCCCCCGGAGCCAAGAAGAAGCCTTTCTCTGCTGTCATCTATGGGGAATGTCGGTGGGGCTTGGACTGGGGAGCACGGCTGGCAGGGCTTCGGCAAACATTGGCTTGGGCACGCGCAGCGCTGCCTCAGCCCTCCGCCATCCCACTCTGTTCCTTGGAATGGATGGAAGTTCGGTCTGACTATCGTGCCTCTACAGTGCCTAAGGACAGAGGCAGGCAACCCTTCTATCCAT
Seq A exon
TCTCACCCAGTTTCTCCTCAATGCAG
Seq C2 exon
AGGCTCTGCTCTTACCTTCTTGGTAACAATGTTGCCCTGTTCATCTGTGAATTGTTCCTCCGTCACCTGCTCTCCTGGAATATTCTGAAGCTCATCCCCCTGGAGTTAGAAGAAGGGAAAGACCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086741-7-5,7-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGCCTCTACAGTGCCTAA
R:
GCAGGTGACGGAGGAACAATT
Band lengths:
120-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types