MmuALTA1043745-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000087097 | 4930586N03Rik
Description
RIKEN cDNA 4930586N03 gene [Source:MGI Symbol;Acc:MGI:1923137]
Coordinates
chr13:23313525-23314315:+
Coord C1 exon
chr13:23313525-23314025
Coord A exon
NA
Coord C2 exon
chr13:23314182-23314315
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTTTGTTTTTGTTTTAGCAGGCA
3' ss Score
7.36
Exon sequences
Seq C1 exon
GTCTCCGACAGCCGGTCCACAAGCTCTGCCGGGTCATTTCACACTGTCAGGGATATTGATTCAGTAACCGTCCAAGGTTAGAAAACCCGTGAGCGCGCAGCTGAAGAGGACCTTACAAAACCTTCTCTGAAGTTAACCTCGGAAATCCTCGTCCTATATGCCCCATGAATTGCGTCTCCGACTGGATTATCCAAACTAGTGAGCCTCTGCCGAGTGTGCACAGCGGACTTGGGCACAGCGAGCTTGATTATATTTCAGCAGGGTAGTTAACTCTTTGGGTGATATGGGGAAATGGAAATCTCATTCACTGACCTAGAATGAGAGGGAAGAGATGAGTGCCGGCATCCTGCTCTTTATGTCCTTCCGGAACTCTCCAATCTGTGTCGTGGAGTATTCACCACAGAAGACTTCTTGGATATGAATTTCAGCCAAGTCTTCATTAGCCGGCAGTGACCACGCTGAATTTCAGGATCCAAATGTAGCACCGAACCTTTCACATG
Seq A exon
NA
Seq C2 exon
GCAGTGCTGTCTACATGTTGAGTTTTTGTCCTGAATGGTACTTCCACCATGGAGTCTGTTGTGCTAAGGACTGGGGGCCTACTAAGGTCTGGACTCCTGTTATAGCCCTAGACTTCCATGGGCATTGTCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087097-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGCACCGAACCTTTCACA
R:
CCCCAGTCCTTAGCACAACAG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types