MmuALTA1044018-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000090173 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr11:62869012-62873470:+
Coord C1 exon
chr11:62869012-62869154
Coord A exon
chr11:62873352-62873370
Coord C2 exon
chr11:62873371-62873470
Length
19 bp
Sequences
Splice sites
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
3' ss Seq
AATCTGTTTCCACCTGGCAGGTG
3' ss Score
8.19
Exon sequences
Seq C1 exon
ACTCTCACTGGGCACGAGGGAGCTGTGAAGTGCCTGTTCTTTAACGAATGGCATCTCGTCTCTGGAGGTGCTGACGGCCTGGTCATGGCCTGGAGCATGGTGGGAAAGTACGAACGGTGCCTGATGGCCTTCAAGCATCCTAA
Seq A exon
GTGTTGTCTTCCCTTCTAG
Seq C2 exon
GGAGGTGCTGCAGGTGTCTCTCCTCTACCTCCGGGTCATCAGTGCCTGTGGAGACGGCAAGATCCGAATTTATAATTTCCTCAATGGGAACTGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090173-18-19,18-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(83.8=64.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCGTCTCTGGAGGTGCTG
R:
TAGAGGAGAGACACCTGCAGC
Band lengths:
118-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types