MmuALTA1044165-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000091705 | H2-Q2
Description
histocompatibility 2, Q region locus 2 [Source:MGI Symbol;Acc:MGI:95931]
Coordinates
chr17:35345158-35345486:+
Coord C1 exon
chr17:35345158-35345274
Coord A exon
chr17:35345438-35345453
Coord C2 exon
chr17:35345454-35345486
Length
16 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCCTCCTTGATCTCTCACAGCTT
3' ss Score
8.29
Exon sequences
Seq C1 exon
AGCCTCCTCCATCCACTGACTCTTACATGGTGATCATTGCTGTTCTGGTTGTCCTTGGAGCTGTGATCATCATTGGAGCTGTGGTGGCTTTTGTGATGAAAAGAGGGAGAAACACAG
Seq A exon
CTTTTCATCTCAACAG
Seq C2 exon
GTGGAAAAGTAAGAGACTACGCTCAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091705-9-8,9-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.792
Domain overlap (PFAM):
C1:
PF066236=MHC_I_C=PU(7.4=5.0)
A:
NA
C2:
PF066236=MHC_I_C=FE(40.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTGTCCTTGGAGCTGTG
R:
CTGGATCTTGAGCGTAGTCTCT
Band lengths:
106-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types