MmuALTA1044180-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000092009 | Myh15
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49172930-49177076:+
Coord C1 exon
chr16:49172930-49173133
Coord A exon
chr16:49176920-49176950
Coord C2 exon
chr16:49176951-49177076
Length
31 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGTGCTTTGCTGCCCTCAGGTT
3' ss Score
10.6
Exon sequences
Seq C1 exon
GATCTTCACCAACAACTGGATGACAGCATTTACCAGAACAAAGACCTGAAGGAACAGGTGGCTCTGGCTGAGCAGCGCACCGTTCTTCTTCAGTCTGAACTTGAAGAGCTGAGGACCTTGCAGGAGCAGACAGAGCGCGGGAGAAAGCTGGCCGAAAAGGAGCTCCTAGAAGCCACAGAAAGAATCAATCTTTTCCACACCCAG
Seq A exon
GTTACCTAACTGGAATGCTGTCCCTCCTTAG
Seq C2 exon
AACACAAGCCTCCTCAGCCAGAAGAAGAAACTGGAGGCCGATGTTGCTCAGGTGCAGAAGGAAGCTGGAGAGATGTTGCAGGCATGTCAGAAGGCAGAAGAAAAGGCCAAAAAGACAGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009-38-43,38-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=NA C2=0.619
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTCCTAGAAGCCACAG
R:
CAGCTTCCTTCTGCACCTGAG
Band lengths:
114-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types