MmuALTA1044301-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000094559 | Cyp2d34
Description
cytochrome P450, family 2, subfamily d, polypeptide 34 [Source:MGI Symbol;Acc:MGI:2385022]
Coordinates
chr15:82618931-82620907:-
Coord C1 exon
chr15:82620669-82620907
Coord A exon
chr15:82619067-82619102
Coord C2 exon
chr15:82618931-82619066
Length
36 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTCTGTCCCTCTTCTTCAGCTT
3' ss Score
10.36
Exon sequences
Seq C1 exon
TGAGTGTTGGTCATTGGCCTCTGGGAAGCCTGGGCAGCAGTGGGGCAACCATGGAGTTGCTGACTGGAACTGGTTTGTGGTCTGTGGCCATATTCACGGTCATCTTCCTGATTCTGGTGGACCTGATGCACCGGCGCCAGCACTGGACTTCTCGCTACCCACCAGGCCCTGTGCCATGGCCTGTGCTGGGTAACCTGCTGCAGGTGGACCTGGATAACATTCCATACAGCTTGTACAAG
Seq A exon
CTTCAAAACCGCTATGGTGATGTGTTCAGTCTGCAG
Seq C2 exon
ATGGCCTGGAAGCCCGTGGTTGTGATCAATGGACTAAAGGCGATGCAGGAAGTGCTGTTGACCTGTGGCAAGGACACTGCTGACCACCCTCCAGTGCCCATATTTGAGTACCTAGGTTTTAAGAGCAAATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094559-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.6=41.3)
A:
NA
C2:
PF0006717=p450=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGACTTCTCGCTACCCA
R:
TTGATCACAACCACGGGCTTC
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types