MmuALTA1044305-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000094559 | Cyp2d34
Description
cytochrome P450, family 2, subfamily d, polypeptide 34 [Source:MGI Symbol;Acc:MGI:2385022]
Coordinates
chr15:82616748-82617273:-
Coord C1 exon
chr15:82617132-82617273
Coord A exon
chr15:82616909-82616931
Coord C2 exon
chr15:82616748-82616908
Length
23 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGC
5' ss Score
4.09
3' ss Seq
GATGCTGTCACGCTAGGTAGAGT
3' ss Score
-1.98
Exon sequences
Seq C1 exon
GCCAAGGGGAATCCTGAGAGCAGCTTCAATGATGAGAACCTGTGCATGGTGGTGAGTGATCTCTTCACTGCAGGGATGGTGACCACCTCAACCACACTGTCCTGTGCCCTGCTGCTCATGATCCTGCATCCGGATGTGCAGC
Seq A exon
AGTTCAACAGGAAATCGATGCAG
Seq C2 exon
TCATAGGGCAGGTGCGGTGTCCAGAGATGGCAGACCAGGCCCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAACGCTTTGGGGACATTATTCCATTGAATATACCACGCATCACAAGTCGTGACATTGAAGTCCAGGATTTTCTGATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094559-9-12,9-11,9-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.2=100)
A:
NA
C2:
PF0006717=p450=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACTGCAGGGATGGTGAC
R:
CTGGTCTGCCATCTCTGGACA
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types