MmuALTA1044433-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000096433 | Zfp994
Description
zinc finger protein 994 [Source:MGI Symbol;Acc:MGI:3643318]
Coordinates
chr17:22224011-22225614:-
Coord C1 exon
chr17:22225539-22225614
Coord A exon
chr17:22224095-22224159
Coord C2 exon
chr17:22224011-22224094
Length
65 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
TCATGTTTATCCTTTTTTAGGCA
3' ss Score
9.71
Exon sequences
Seq C1 exon
GGCGGAGGGCCTGGGGAGGCGGCAGTCGGCAGTGCAACTGTTGGCACAGCAGCCCGGCGGCCCCGAAAGGTCCCAG
Seq A exon
GCATCCTTTATTTTTGTTCCATGAAAAGTTCTGGGTGCTTTCTGAAGACTCTTTCCCTTGTGCAG
Seq C2 exon
GTATCACACTCATCAGGTAGTTCAGCTCACCTGTGAAACTGAGAACCCTGGATGGTGAAGAGAGGAAACTAGCAAAGGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096433-2-1,2-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTCGGCAGTGCAACT
R:
TGGATCCTTTGCTAGTTTCCTCT
Band lengths:
138-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types