MmuALTD0000668-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000062260 | AA415398
Description
NA
Coordinates
chr4:119206346-119211917:-
Coord C1 exon
chr4:119211817-119211917
Coord A exon
chr4:119211615-119211816
Coord C2 exon
chr4:119206346-119206414
Length
202 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
AAGACTCTCCAACCCCACAGGCA
3' ss Score
6.45
Exon sequences
Seq C1 exon
GCGGATTTTCCCGGCCGCCACCGGGGCGCTTTGGACCTTGCTTGGGGACACGCGTCCTTCGGAATGTCAAGAACCCGGGTTCGAGGCCCCTCCCTACCCAG
Seq A exon
GCATGTCATCTTGTCATTACCCCTGCCGCGTCATCCTCTCCATCTCAAGTTAGCTGGCCAGGTCGTGGCCTCACTATCAACAGGTGGAGCCTTTAGTAGGGTTGTTCAGACTTCTGGTAAACTTTGGACTTTCCCTTTGGTCTTCCCTGGTCCTACCTCTGAACTGTTAGCGTTGACAATCTGTGCTATCCTGTTACACTTG
Seq C2 exon
GCATTGTTTCTACTGATATGAAAATTGCAACCTCCTGGGGCTAGCCACTGCAAGAAGACGTCTTAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062260-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTTCCCGGCCGCCAC
R:
CCGCTAAGACGTCTTCTTGCA
Band lengths:
167-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: