MmuALTD0000777-1/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:109952833-109957318:-
Coord C1 exon
chr11:109957218-109957318
Coord A exon
NA
Coord C2 exon
chr11:109952833-109952934
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CTTTTTTTCTTATTAAACAGACC
3' ss Score
9.42
Exon sequences
Seq C1 exon
GACTGGGAATGCTCAAAACAGGCAAACAGAATGAAAGCAATACAGATGTGATAGAGACCGGGGAGAAGTAGAACCCATTCTCTTGGAGTGGGGAAACAGAG
Seq A exon
NA
Seq C2 exon
ACCAAGATGGTTAAGAGAGAGATAAATGTGTGCCAACAAACGTGGGCCTTATTGTGCAAGAATCTTCTCAGAAAAAAGAGACTGAAAAGAGATACATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF126982=ABC2_membrane_3=PU(1.0=12.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATGCTCAAAACAGGCA
R:
CCACGTTTGTTGGCACACATT
Band lengths:
143-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: