MmuALTD0000833-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76238769-76250722:-
Coord C1 exon
chr11:76250471-76250722
Coord A exon
chr11:76250451-76250470
Coord C2 exon
chr11:76238769-76238828
Length
20 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
3' ss Seq
CCACCTCTCTGTCTCTGCAGCTG
3' ss Score
12.02
Exon sequences
Seq C1 exon
AACAGTCCGGCTAAGCACTCGGGCGGGTGCAGACAGCAGCTCTCTCCAGAGCCGCTTGTGCGCTTCTCCACCTTTCTGCCCGGATCTGGCTCGGCAGGCTGGCCGCCGGCATGACGGATATCCTGCCCCAGCCCGACTGCAGCCTGAAAGCAGTGTGCGAATCCCTGGAGCACTGCTGTCTGGATCAGCTGGAGGAGCCGGGGAGCAAGCGAATGCCCAATACTGGCGCCCGACTCTGGGGCCGAGTGCGCA
Seq A exon
GTAAGCTGCTTCGCCACAAG
Seq C2 exon
CTGGATCCACAGACAGTAGAAAGCAAGAACTGGCATACGGACGTGATTGAAATGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-25-32,26-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGGATCAGCTGGAGGAG
R:
GTCCGTATGCCAGTTCTTGCT
Band lengths:
118-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: