MmuALTD0001298-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000022309 | Angpt1
Description
angiopoietin 1 [Source:MGI Symbol;Acc:MGI:108448]
Coordinates
chr15:42476378-42496459:-
Coord C1 exon
chr15:42496230-42496459
Coord A exon
chr15:42496227-42496229
Coord C2 exon
chr15:42476378-42476505
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TCTCTCTTTTAAATTTGCAGTTT
3' ss Score
8.96
Exon sequences
Seq C1 exon
TTTACTAGAGCACAAAATCTTAGAAATGGAGGGAAAACACAAAGAAGAATTGGACACCTTGAAGGAGGAGAAAGAAAACCTTCAAGGCTTGGTTTCTCGTCAGACATTCATCATCCAGGAGTTGGAGAAGCAACTTAGTAGAGCTACCAACAACAACAGCATCCTGCAGAAGCAACAACTGGAGCTCATGGACACAGTTCATAACCTTATCAGCCTTTGCACTAAAGAAG
Seq A exon
GTG
Seq C2 exon
TTTTGCTAAAGGGAGGAAAAAGAGAAGAAGAGAAACCATTTCGAGACTGTGCAGATGTATATCAAGCTGGTTTTAATAAAAGTGGAATCTACACTATTTATTTTAATAATATGCCAGAACCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022309-12-9,13-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF089195=F_actin_bind=WD(100=64.6)
A:
NA
C2:
PF0014713=Fibrinogen_C=PU(14.0=69.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGCTCATGGACACAGT
R:
TCTGCACAGTCTCGAAATGGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types