MmuALTD0001856-2/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000006057 | Atp5g1
Description
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) [Source:MGI Symbol;Acc:MGI:107653]
Coordinates
chr11:96074987-96075581:-
Coord C1 exon
chr11:96075557-96075581
Coord A exon
chr11:96075427-96075556
Coord C2 exon
chr11:96074987-96075033
Length
130 bp
Sequences
Splice sites
5' ss Seq
ACGGTAATG
5' ss Score
6.53
3' ss Seq
TTTTCTCCCCCTTCTTGCAGATT
3' ss Score
13.61
Exon sequences
Seq C1 exon
GGGCTGCAGGGGAGTGGGAGTGCAG
Seq A exon
GTGACTTGGGGCTGGGAGACAGGGGTCCGCAAGGCCGTGGGTTGTGCCACGTGGAGCACCATTTGCCTCCAGGGATAGGGAAGGAGGACTAGAGTCTTTAAGCCTTATCAATTAATGTTAATTACCAACG
Seq C2 exon
ATTGAAAAATGCAGACCACCAAGGCACTGCTCATTTCTCCAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006057-1-4,2-4,3-4,4-4-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types