MmuALTD0002180-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:74640629-74643003:+
Coord C1 exon
chr10:74640629-74640701
Coord A exon
chr10:74640702-74640768
Coord C2 exon
chr10:74642869-74643003
Length
67 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TGTTTCTGCGTTCTCTGCAGATA
3' ss Score
12.15
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTGCGCCAGTGTGTGGAAGAGATCGAGCGCCGGGGTATGGAGGAG
Seq A exon
GTGGGCATCTACCGAGTGTCTGGAGTGGCCACAGACATCCAGGCACTGAAGGCAGCCTTTGATGTCA
Seq C2 exon
ATAACAAGGATGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCCGGCACGCTGAAGCTCTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-23-25,24-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGAAGAGATCGAGCG
R:
ATGCCTTCTGCGAAGTTAGGG
Band lengths:
170-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: