MmuALTD0002303-2/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000029279 | Brdt
Description
bromodomain, testis-specific [Source:MGI Symbol;Acc:MGI:1891374]
Coordinates
chr5:107331207-107341441:+
Coord C1 exon
chr5:107331207-107331307
Coord A exon
chr5:107331308-107331362
Coord C2 exon
chr5:107341300-107341441
Length
55 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TGGTGCTTCTTTTTTCTTAGGAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GAGAGCTGGCGGCCACCGGTGGAGAACCGGGAGCGACGGTCCTGCACTGCTTCATCTAGTGCAAACTGAAAGGGTGATCGGATAAGGCCCTTTCCTAAGAG
Seq A exon
GTACTACCATTGCTACAGAGGCTCGGCCCTGGGGCCGCCCCAGGCGGCTCTTTGG
Seq C2 exon
GAATTTGTAGACTTTTCCTGCTAAGACCTCAATTTGTATTTTTGAAGAACAGAAAGAAATTCTGTGACGTGTTGAAATAATTTAAACCATCTAAGACCAAGACACACATAATGAAGCAATGCATACTATTTATATAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029279-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGATCGGATAAGGCCCTT
R:
TGTGTGTCTTGGTCTTAGATGGT
Band lengths:
138-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types