MmuALTD0002453-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000020882 | Cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:MGI Symbol;Acc:MGI:102522]
Coordinates
chr11:97871172-97871686:-
Coord C1 exon
chr11:97871610-97871686
Coord A exon
chr11:97871318-97871609
Coord C2 exon
chr11:97871172-97871230
Length
292 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAA
5' ss Score
0.93
3' ss Seq
CTCTAACCCCTGCGTGACAGGTG
3' ss Score
6.15
Exon sequences
Seq C1 exon
AGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCGTCGCTCAAGGGCTATGAG
Seq A exon
GTAGGAGCTCTAAAGGGCAGTTCACTCAGACGGGCCCAGACCTCCAGAGTGTGCAGATATTCCAAAGGGTCCCATGTCCCCAAAGCTCATTATCCCTTCAGAGAAAACCCTTAAGGGGGCCTGACCCACGGGAAGTCCACTCAGGAGGGCCCAGTCTCCCAAGGAAAATTCTTAAGAGTCCTTTTGGAGATGCCATGTAAGAGACCGGTGGAATCAGGCTGCATCGGAGGCTCCGGCTCCTGAGGAAACTCCCACCCTTCTAGAGACCCCCTCATCTCAAGAGTTTCGAAAG
Seq C2 exon
GTGACAGACATGATGCAGAAAGCGTTGTTTGACTTCCTCAAGCATCGGTTTGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020882-12-14,13-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(8.3=55.6)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: