MmuALTD0002650-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000047696 | Ccdc144b
Description
coiled-coil domain containing 144B [Source:MGI Symbol;Acc:MGI:2681852]
Coordinates
chr3:35924270-35924892:-
Coord C1 exon
chr3:35924831-35924892
Coord A exon
chr3:35924777-35924830
Coord C2 exon
chr3:35924270-35924363
Length
54 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGA
5' ss Score
5.27
3' ss Seq
TTTTAAAATGTACATTATAGGCT
3' ss Score
5.24
Exon sequences
Seq C1 exon
TTACAGGAAGCACCGGACCAACACACCCAGTGCACGGAGAAGATGCGGGACTGCATACAAAA
Seq A exon
GTACACGGCTGCATGCAAATGACTTGAGTATTTACAAAGCAAATAAATAGTGTG
Seq C2 exon
GCTTGGACTTGAAAATCACAAGTTAAAAGAGACAGCAAGAAAGCAAGCAGAGAAAATTGAACAGTTAAAGAAAAATCTACTAAGTGGAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047696-5-6,6-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.493 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACAGGAAGCACCGGACCAA
R:
TCTTTAACTGTTCAATTTTCTCTGCT
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: